SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does no...Tags: Bioinformatics, NGS, Sequence, Alignment, Synteny, Comparative genomics, Genomics
2912 days ago
Tags: Bioinformatics, MAF, mafTools, Alignment, Multiple
2904 days ago
Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS
2874 days ago
Tags: Bioinformatics, Analysis, Alignment, Synteny, Spines
2713 days ago
Tags: Bioinformatics, Rearrangement, Mauve, Tool, Alignment
1969 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, YAHA
2660 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, SpeedSeq
2660 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Harvest, Alignment, Tools
2649 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FS...Tags: Bioinformatics, FSA, Fast, Statistical, Alignment, DNA, Sequence
2643 days ago