Kraken: ultrafast metagenomic sequence classification using exact alignments
...slow and computationally expensive, forcing researchers to use faster abundance estimation programs, which on...minute, 909 times faster than Megablast and 11 times faster than the abundance estimation program MetaPhlAn....2896 days ago
2732 days ago
Genome Assembly Tools and Software - PART1 !!
...sequencing along a Reference Sequence The abundance of repeat elements in genomes...of reads, KmerGenie first computes the k-mer abundance histogram for many values of...nks 2.2.1 – Transcript Assembler & Abundance Estimator for RNA-Seq Cuff...2713 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudo...io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and...ent in metagenomic samples and profiles their abundances (uses composition-based appr...2398 days ago
Research fellow (PhD candidate) in computational biology – 2 positions
...inent. The Valen group is dedicated to the fundamental question of how transcription and translation is integrated to obtain the desired protein abundance. The recent development of hi...3690 days ago
2102 days ago
Tags: KAD, Assessing, genome, assemblies, K-mer, assemblies, abundance, Illumina, reads
1443 days ago
Tags: Estimating, Abundance
610 days ago
1388 days ago
Comment on "Running Trinity on RNA-seq !"
...f your organism based on your assembled transcripts and the input RNA-Seq data. Such studies might include: Quantifying transcript and gene abundance. This is a prerequisite to ma...2150 days ago