FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...timates. Based on our experiments with complete and draft genomes, its accuracy is on par with BLAST-bas...utation of large number of genome pairs. More details about its speed, accuracy and potential applications ar...2135 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
...peline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only considerin...2122 days ago
LSC :a long read error correction tool
...You're ready, Happy LSCing! Latest publication Kin Fai Au, Jason Underwood, Lawrence Lee and Wing Hung Wong Improving PacBio Long Read Accuracy by Short Read Alignment ...2115 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...r third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several stud...ve the highest mapping rate among all competing algorithms and highest accuracy when most of the basepairs of...2097 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can...2080 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
...e combination of sequence profiles with low-resolution structure models from protein structure prediction, which helps enhance the robustness and accuracy of the method and make it app...2076 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
...n the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCONwhile producing contigs of comparable base accuracy.2037 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
...on multi-core architectures allows for a relevant reduction of the execution time for haplotyping, while the provided results enjoy the same high accuracy as that provided by What...2011 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...run a short read assembler on Illumina data How to run a long read assembler on Pacific Biosciences or Oxford Nanopore data How to improve the accuracy of a long read assembly using...1945 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
...biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, accuracy of TF-DNA binding detection,...1880 days ago