2158 days ago
2152 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding...2151 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...y information for scaffolding de novo genome assemblies. FragScaff is complementary to Lachesis, providing midrange contiguity to support robust, accurate chromosome-scale de novo geno...2180 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...pecialized for specific read technologies or protocols, with slow or inaccurate performance on others. With t...ease cite: Edge, P., Bafna, V. & Bansal, V. HapCUT2: robust and accurate haplotype assembly for divers...2179 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...tide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of...2171 days ago
minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining, and SIMD-parallel Smith-Waterman-Gotoh extension.2170 days ago
GenomeMapper: Simultaneous alignment of short reads against multiple genomes
GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align...2169 days ago
WhatsHap: fast and accurate read-based phasing
...type assembly. It is especially suitable for long reads, but works also well with short reads. Features Very accurate results (Martin et al., WhatsHap: fast and accurate read-based phasing) Works we...2166 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ffs between accuracy and read length. Several studies require long and accurate reads including de novo assem...dress these shortcomings have the potential to achieve better and more accurate integration of these two tech...2082 days ago