Results for "Algorithm Design"
Top-level pages
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data anal...g containers, string matching algorithms, and other utilities, for fa...tion factor binding site. The algorithm extends the popular motif dis...in some part of the list. The algorithm was developed for detecting t...3638 days ago
Commercial and public next-gen-seq (NGS) software
...is a short read mapping tool designed for accurate read alignments....MAPper (gnumap) is a program designed to accurately map sequence dat...ents using the Smith-Waterman algorithm. Features a number of support...A Consistency-based Consensus Algorithm for De Novo and Reference-...3532 days ago
Software packages for next gen sequence analysis
...is a short read mapping tool designed for accurate read alignments....MAPper (gnumap) is a program designed to accurately map sequence dat...ents using the Smith-Waterman algorithm. Features a number of support...A Consistency-based Consensus Algorithm for De Novo and Reference-...3255 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...bels or genome-wide measures; designed to represent variation in one...2Kplus2 Description: algorithm searches graphs produced by d...l indels from diploid sample; designed to run on “nux-like plat...re-mRNA splicing; combines 12 algorithms to identify mutations&rsq...2922 days ago
Genome Assembly Tools and Software - PART1 !!
...genomes while the others are designed aiming at handling complex gen...ightweight Resources Assembly Algorithm Lightweight resources assembly algorithm for high-throughput sequencin...m Raw Reads REPdenovo is designed for constructing repeats direc...2699 days ago
Source Code and Pseudo Code !!
...ctions are to be executed. An algorithm is merely the sequence of ste...hat helps programmers develop algorithms. Pseudocode is a "text-based" detail (algorithmic) design tool. The rules of Pseudocode a...seudocode to elaborate on the algorithmic detail and not just cite...2672 days ago
Awesome perl frameworks, libraries and software - PART 1
...kit/Gambot - Gambot is a modular IRC bot written in Perl. grantm/Algorithm-CouponCode - Perl librar...queues, and processing them later. perl6/specs - Perl 6 language design documents trizen/sidef ...2502 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination o...hird-generation NGS data (can distinguish patients’ specific mutations; algori...2384 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was use...e bruijn graph(s) - 31, 51 and 71 only run the assembler, not the correction algori...
2364 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely u...SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq duri...ence of Cellular Expression Relationships (SLICER) algori...2364 days ago
