Results for "Algorithm Designing"
Top-level pages
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference asse...alignments using the Smith-Waterman algorithm. Features a number of support...mina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commerc...QAN - A Consistency-based Consensus Algorithm...3532 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference as...alignments using the Smith-Waterman algorithm. Features a number of support...mina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commerc...QAN - A Consistency-based Consensus Algorithm...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including ali...utput: 2Kplus2 Description: algorithm searches graphs produced by d...file, reference genome and mapping algorithm an experiment directory will...tudy pre-mRNA splicing; combines 12 algorithm...2922 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads an...Lightweight Resources Assembly Algorithm Lightweight resources assembly algorithm for high-throughput sequencin...ularize genome assemblies. The algorithm and benchmarks are described...es cutting-edge technology and algorithm...2699 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions t...hose actions are to be executed. An algorithm is merely the sequence of ste...uage that helps programmers develop algorithms. Pseudocode is a "text-based...e of pseudocode to elaborate on the algorithm...2672 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a sc.... grickit/Gambot - Gambot is a modular IRC bot written in Perl. grantm/Algorithm...2502 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination o...hird-generation NGS data (can distinguish patients’ specific mutations; algorithm...2384 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was use...e bruijn graph(s) - 31, 51 and 71 only run the assembler, not the correction algorithm...
2364 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely...SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq duri...nce of Cellular Expression Relationships (SLICER) algorithm...2364 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a diff...; print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_Sorted...ein::XS are both versions of the Levenshtein algorithm...2354 days ago
