Results for "Algorithms"
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Cactus: a reference-free whole-genome multiple alignment program
Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substantial reso...1722 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...ncing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures....kably reduces the need for computationally-costly dynamic programming algorithms. The first key idea of our pr...1638 days ago
The wavefront alignment (WFA) algorithm
...at takes advantage ofhomologous regions between the sequences to accelerate the alignment process. As opposed to traditional dynamic programming algorithms that run in quadratic time, t...1401 days ago
- ...lity to detect, quantify, and visualize complex and de-novo splicing variations from RNASeq. MAJIQ’s accuracy compares favorably to other algorithms. MAJIQ 2 is *way* faster, mo...
1390 days ago
A guide to machine learning for biologists
...machine learning techniques, including the most recently created and frequently used deep neural network techniques. We illustrate how different algorithms may be adapted to specific ty...853 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses. Careful enco...817 days ago
- ...ication of the Carrot2 clustering engine. It uses Carrot2's algorithms to organize search results in...Elasticsearch: queries an Elasticsearch instance. Clustering algorithms Lingo: creates well-d...
388 days ago
