Results for "Analysis of up/dawn-regulation of brain products and its carcinogenic effects on peripheral cells"
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be fre...rse a NCBI blastx output file and output the top N hits of each blast search result....it start, hit end, positives, and identical # The results are...gram for browsing and further analysis. # use strict; use...2925 days ago
Extract ids from file with perl
#!/usr/bin/perl use strict; use warnings; m...ey; while () { chomp $_; my @cells = split /\t/, $_; $idHash{$cells[0]}=...############################ #Open and Read a file sub read_fh {...$filename = shift @_; my $filehandle; if ($filename =~ /gz$/)...2619 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis...[1] eq "ids") { my $idFile="palindrome_ids.txt"; open my $handle...2151 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic...Configure. My job is to poke and prod your system to figure ou...the `--ask' flag on the command line, in which case I'll prom...e pulling some defaults from its configur...hints - Load platform and loc...1548 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/tra...oursnell, Rob Patro, Julian Hibberd, and Steve Ke...given) 2. read mapping based (if --left and --r...les Show some example commands with...v [ INFO] 2018-07-13 14:54:40 : Writing analy...
2134 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/b...ES/FILE gatk forwards commands to GATK and adds some sugar for submittin...that pass quality thresholds and Illumina-specific filters....AM/CRAM by read group, sample and library name SplitSamByLib...
2086 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail -------------------------...libXrandr/1.5.0-foss-2016a BLACS/1.1-...mcr/R2010A_v713 Circuitscape/4.0.5...pandas/0.18.0-foss-2016a-Python-2....randrproto/1....2045 days ago
Setting up falconUnzip conda environments for genome assembly !
➜ Analysis_Results conda create -n denovo_asm Solving environ...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb...22 KB bioconda pbcommand-1.1.1 |...bioconda pbcommand:...2001 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP...ic/universe amd64 libmodule-scandeps-perl all 1.24-1 [28.6 kB]...g to unpack .../1-libmodule-scandeps-perl_1.24-1_all.deb ... U...hundreds of microbial genomes and highly contiguous reconstruct...eld that involves the design, analysis, an...1522 days ago
Commands to install conda in Ubuntu !
...SD License: Redistribution and use in source and binary forms, with or without...onda, Inc.") nor the names of its c ontributors may be used to endorse or promote products derived from this softwa...ES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY T...1522 days ago
