Results for "Analysis tool"
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU General Public License. # T...nated and ready for import into a spreadsheet program for browsing and further anal...2906 days ago
Perl script to run SATSUMA in loop !
...rict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...le = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # L...2132 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...]...rror --legacy-report use legacy style 'Written spots' for tool ./fastq-dump : 2.9.1 ( 2....
2118 days ago
Install Parrot Virtual Machine !
.........................yes. auto::perldoc - Is perldoc installed.................................no. auto::coverage - Are coverage analysis tools installed...Negative repeat...1529 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...planations ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64...igs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2115 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick...869/869), done. Checking connectivity... done. ➜ Tools git:(master) ✗ cd Porechop...IN_SPLIT_READ_SIZE] [-h] [--version] Porechop: a tool for finding adapters in Oxfor...2098 days ago
- ...[] Usage template for all tools (uses --spark-runner LOCAL when used with a Spark tool) gatk AnyTool toolArgs U...Tools that process sequencing machine...ools that perform metagenomic analysis, e.g. microbial community...
2067 days ago
Installing pb-assembly on Linux !
...libtool/2.4.6-foss-2016a Automake/1.13.4...libtool/2.4.6-foss-2016b Automake/1.14-G...e currently available SMRT(R) Analysis builds. While # # effort...py27_1 conda-forge samtools 1.9...2026 days ago
- #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_M...
1996 days ago
Setting up falconUnzip conda environments for genome assembly !
...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb-asse...83 KB conda-forge setuptools-40.6.2 | py27...bioconda bcftools: 1.9-h4da6232_0...1982 days ago
