Results for "Analysis tool"
Blogs
Illumina based assembly pipeline steps !
...2) Sort and index alignments (SAMtools) Primer sequence removal (iVar;...l) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon c...assessment report (QUAST) Lineage analysis (Pangolin) Clade assignm...ersect variants across callers (BCFTools) De novo assembly Primer...881 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • &nb...g on a PC, BMC Bioinformatics, 2013; 14():Article no. 160, Kmer-db Tool for estimation of evolutionar...867 days ago
List of comparative genomics resources !
...b -- a livestock QTL database tool set for positional QTL informatio...logenetic Tree Reconstruction Tool Based on Whole Genomes Construct...Conduct comparative biometric analysis of chromosomes of different o...phylogenetic and evolutionary analysis. PhyloPat -- the phy...681 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/ap...ps://bioconductor.org/packages/release/bioc/html/RUVSeq.html SARTools - https://github.com/PF2-pasteur-fr/SARTools tximport - https:...548 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This tw...icle/pii/S2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdown, Git...putational workflows is automated using continuous anal...545 days ago
Bioinformatics tools to explore SSRs in genomes !
...re are several bioinformatics tools that can be used to explore Simp...r: SSR Locator is a web-based tool that identifies SSRs in both...imer3: Primer3 is a web-based tool that designs PCR primers for...are more appropriate for your analysis.429 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical location where a chromosome is broken and rearranged...eakpoints can be detected using a variety of techniques, including cytogenetic anal...429 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that ar...m Repeat Finder: Tandem Repeat Finder is a software tool that identifies tandem repeat...used on both nucleotide and protein sequences. The tool uses a statistical algorithm...427 days ago
Common steps for reads mapping !
...ential step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general steps...Most mappers have their own indexing tools. Prepare the read data: The...Post-processing: Depending on the analysis being performed, post-pro...427 days ago
Steps to find palindrome in genomes !
...sequence directly for palindromic sequences using pattern matching tools, such as regular expressions or...s, but may miss more complex palindromic structures. Dot plot analysis: Dot plot analysis is a graphical method tha...427 days ago
