Bioinformatics Algorithm Demonstrations and Tutorials
Abstract This project presents demonstrations of selected computer science algorithms important in bioinformati...ng), Hierarchical Clustering (used in phylogenetic studies and microarray anal...3708 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):1...rdjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://researc...3901 days ago
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Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server:..., but on raid and data will never be deleted most analysis should be performed here /...h is properly backed up ) intermediate anal...1143 days ago
Bioinformatics software for biologists in the genomics era
...astructure often employed for the analysis of large numbers of genes, lo...which biologist-friendly software tools are designed and developed to fu...ackages in molecular evolutionary analysis. Furthermore, biological...osition that biologists should re-tool and become programmers when a...3791 days ago
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Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo...ible workflows for NGS microbiology data analysis. Enabling microbiology researchers to conduct their own custom analysis and data manipulation wit...3578 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability,...and line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present...3623 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS anal...3589 days ago