Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...s using SNPs (based on k-mer analysis) Software (C) https://sourc...axonomic assignment in metagenome analysis by exact k-mer search; L...ts/lmat/ stringMLST k-mer-based tool for MLST directly from the ge...-mer-based ultrafast metagenomics tool for assigning taxonomy to seq...2375 days ago
Single Cell RNAseq data analysis tutorial !!
...nks: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data.../2016/09/02/036558 Citrus: A toolkit for single cell sequencing ana...uation in single-cell RNA-seq analysis https://github.com/zji90...2354 days ago
2354 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystem...tailed annotation and pathway analysis. Takes several hours per geno...ctional profiling and pathway analysis of your genome(s)…...vironment. BEACON (automated tool for Bacterial GEnome Annotati...2335 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine w...mation regarding which sequences came from which reference file. BBSplit is a tool that bins reads by mapping to...2318 days ago
2309 days ago
List of visualization tools for network biology
...or population level. Few tools published in BMC are listed here...om/articles/sections/networks-analysis. Following are the list of...icient integrated multi-level analysis of microarray, sequence, regu...Igraph Collection of network analysis tools with the emphasis on efficie...2292 days ago
List of visualization tools for genome alignments
...esults but also for improving analysis protocols, testing data quali...lt drafts. Its integration in analysis pipelines allows the optimiza...enome alignment visualization tools, which could be useful for analysis and interpretation o...VM Java Visual Mapping tool for NGS reads http://www.spr...2287 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. File Syst...2284 days ago
Computational resources for TE discovery and TE detection
...d increasing interest in developing new methods for their computational analysis. Following are the list of...http://www.ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDfinder/ Tu Lab TE tools http://jaketu.biochem.vt.edu...2278 days ago