Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achi...1619 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ is a Python3-based toolkit which aims to automatically filte...y result, annotate mitogenome (genbank file as result), and mitogenome visualization. Mit...hub.com/linzhi2013/MitoZ. https://academic.oup.com/nar/article/...1557 days ago
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MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads...r More at https://www.sciencedirect.com/science/article/pii/S2589004219302366 https://www.sciencedirect.com/science/article/...1553 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless integration with the TensorFlow mach...1548 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated p...ualization of enrichment analysis results and related networks. Currently,...an, Mouse, Arabidopsis thaliana,and Yeast)These data are ava...//academic.oup.com/bioinformatics/advance-article/...1538 days ago
CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classificatio...istinct specific classification problems (see the article for details), namely (1)...of metagenomic reads to known bacterial genomes, and (2) the assignment of BAC clones and tran...1535 days ago
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shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
shinyChromosome is a graphical user interface for in...mosome/, http://shinyChromosome.ncpgr.cn, and https://yimingyu.shinyapps.io...hromosome for online use. The source code and manual of shinyChromosome are...e/ https://www.sciencedirect.com/science/article/...1521 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct...mbly. It can take multiple set of reads in a single run and polish the assemblies of geno...at https://academic.oup.com/bioinformatics/advance-article/...1505 days ago