Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bio...a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves per...1618 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome...e from https://github.com/linzhi2013/MitoZ. https://academic.oup.com/nar/article...1556 days ago
1555 days ago
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads MALVA cal...More at https://www.sciencedirect.com/science/article/pii/S2589004219302366 https://www.sciencedirect.com/science/article...1552 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucl...1547 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visua...p;netGO-Data repository. https://academic.oup.com/bioinformatics/advance-article...1537 days ago
CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the article...1534 days ago
1521 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams develop.../yimingyu.shinyapps.io/shinychromosome/ https://www.sciencedirect.com/science/article...1521 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple s...f/1902.04341.pdf More at https://academic.oup.com/bioinformatics/advance-article...1504 days ago