Results for "Assemblies"
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RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold mergingTags: RagTag, software, tools, scaffolding, improving, modern, genome, assemblies
964 days ago
CrossMap: program for genome coordinates conversion between different assemblies
CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF,&nb...Tags: CrossMap, program, genome, coordinates, conversion, different, assemblies
827 days ago
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL license. All source code and a containerized version of the GenomeQC pipeline is available in the GitHub repository https://gi...Tags: GenomeQC, quality, assessment, tool, genome, assemblies, gene, structure, annotations
714 days ago
- Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.
Tags: Syri, compares, alignments, chromosome-level, assemblies, synteny, structural, rearrangements
701 days ago
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