Results for "Average"
Bio-Scripts
...le 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sym/greg200k-sv2.2.tar | tar xvf - % Total % Received % Xferd Average Speed Time Time Time...2049 days ago
Bash commandline to install Anaconda !
...s $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % Received % Xferd Average Speed Time Time Time...1570 days ago
Commands to install conda in Ubuntu !
...-HP-Pro-3335-MT:~/Downloads/jittmp$ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % Received % Xferd Average Speed Time Time Time...1526 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total % Received % Xferd Average Speed Time Time Time Curr...1229 days ago
Tadpole is 250x faster than SPADes assembler !
...d at least this much. mincontig=auto (minc) Do not write contigs shorter than this. mincoverage=1 (mincov) Do not write contigs with average coverage below this. trimend...991 days ago
Perl script to parse blast results and plot basic stats !
...Calculate additional statistics my $avg_percent_identity = calculate_average(\@blast_entries, 'PERCENT_IDENTITY'); my $avg_alignment_length = calculate_average(\@blast_entries, 'ALIGNMENT_L...109 days ago
Perl script to calculate the basic stats of the assembled genome !
...of Contigs: $num_contigs\n"; print "Minimum Contig Length: $min_contig_length\n"; print "Maximum Contig Length: $max_contig_length\n"; print "Average Contig Length: $avg_contig_le...109 days ago
Python script for basic stats of the assembled genome !
...of Contigs: {num_contigs}") print(f"Minimum Contig Length: {min_contig_length}") print(f"Maximum Contig Length: {max_contig_length}") print(f"Average Contig Length: {avg_contig_le...109 days ago
