2961 days ago
3713 days ago
Tools to detect synteny blocks regions among multiple genomes
...eudomolecules), by draft sequence contigs, or by FPC physical maps (with BAC-end or marker sequence). htt...onship between genetic maps and large sequences (scaffolds, chromosomes, BACs, etc.). Based on tab –...2609 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...curacy across diverse sequencing technologies, including but not limited to: NGS short reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT reads (PacBio)...2181 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ior transition/emission probability distribution for each long read and uses this to correct errors in these reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 and CH17-2...2084 days ago
Genome Assembly Tools and Software - PART2 !!
...genome shotgun reads, or a combination of whole genome shotgun reads and BAC or other localized reads. CG...;is a short read assembler for assembling antigenic variant sequences in bacteria. VelvetK 20120606 &ndas...2685 days ago
Awesome perl frameworks, libraries and software - PART 2
...for Marshaling XML to Perl (moose) Classes and back. nothingmuch/search-gin&nbs...ote method calls with transparently wrapped callbacks... in perl! silnrsi/font-t...module for HTML checking patschbo/BaNG - Backup Next Generation for Linux...2493 days ago
High Density Sheep SNP Genotyping Chip released!!!
...ers were discovered through sequencing reduced representation libraries with the Illumina Genome Analyzer IIx. A set of 600 SNPs were identified by BAC end sequencing and validated...3896 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowledge is sufficient to support critical end-point objectives such as map-based cloning and marker-assisted breeding. http://www.e...Tags: Webinar, Selective Sequencing, Gene, BAC
3918 days ago