2980 days ago
3732 days ago
Tools to detect synteny blocks regions among multiple genomes
...eudomolecules), by draft sequence contigs, or by FPC physical maps (with BAC-end or marker sequence). htt...onship between genetic maps and large sequences (scaffolds, chromosomes, BACs, etc.). Based on tab –...2628 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...curacy across diverse sequencing technologies, including but not limited to: NGS short reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT reads (PacBio)...2200 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ior transition/emission probability distribution for each long read and uses this to correct errors in these reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 and CH17-2...2103 days ago
Genome Assembly Tools and Software - PART2 !!
...genome shotgun reads, or a combination of whole genome shotgun reads and BAC or other localized reads. CG...;is a short read assembler for assembling antigenic variant sequences in bacteria. VelvetK 20120606 &ndas...2704 days ago
Awesome perl frameworks, libraries and software - PART 2
...for Marshaling XML to Perl (moose) Classes and back. nothingmuch/search-gin&nbs...ote method calls with transparently wrapped callbacks... in perl! silnrsi/font-t...module for HTML checking patschbo/BaNG - Backup Next Generation for Linux...2512 days ago
High Density Sheep SNP Genotyping Chip released!!!
...ers were discovered through sequencing reduced representation libraries with the Illumina Genome Analyzer IIx. A set of 600 SNPs were identified by BAC end sequencing and validated...3915 days ago