Public Databases for Bioinformatics !
...p;https://www.encodeproject.org/files/ENCFF546PJU/@@download/ENCFF546PJU.bam, https://www.encodeproject.org/files/ENCFF059BEU/@@download/ENCFF059BEU.bam. Blacklisted regions were obt...1131 days ago
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REAPR: a universal tool for genome assembly evaluation
...broken assembly based on the error calls. The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information suc...2943 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...or from public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing...2923 days ago
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