Results for "BASE"
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Comment on "A quick guide to Phred scaling"
...he probability of an error in each base call in a sequencing read. He..., the more confident we are in the base call. For example, a Phred sc...culation: The Phred score for each base call is calculated as follows...indicate greater confidence in the base call. The Phred scores are ca...428 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when...595 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ft...100 13.8M 0 0 440k 0 0:00:32 0:00:32 --:--:-- 425k(base) [jnarayan@hn1 TOOLS]$ curl -...100 11.4M 0 0 509k 0 0:00:23 0:00:23 --:--:-- 558k(base) [jnarayan@hn1 TOOLS]$ chmod...892 days ago
Comment on "Sibelia: A comparative genomics tool"
.... Strand -- strand of the synteny block instance, either '+' or '-'. Input sequences are treated as positive strands 3. Start -- one-based index of the first base pair of the instance 4. End...1297 days ago
- Install ASCIIGenome with conda (base) [wsu29@bladeamd-2 ~]$ conda install ASCIIGenomeCollecting package metadata (current_repodata.json): doneSolving environment: done## Package Pla...
1532 days ago
Comment on "Perl script to count number of Ns in a multifasta file !"
If you want to count all 'N' in miltifasta file. (base) ? output_2_test git:(master) ? more scaffolds.fasta | grep -Ho N * | uniq -c 12 draf...1575 days ago
Comment on "Long read assembly workshop !"
Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html2051 days ago
- ...calling. qrqc qrqc. Quickly scans reads and gathers statistics on base and quality frequencies, read...in coverage, GC bias) and expression correlation (the tool provides RPKM-based estimation of expression lev...
2150 days ago
- Intitially, I use Perl for genome base parsing and analysis work, and found it quick and less cody. But, now a dayz I don't like perl, because I think it can induce to many bad-behav...
3896 days ago
