Results for "BBMap/BBTools package"
Bio-Scripts
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::E...der and re-run it" fi echo -e "\nAll Done\n" echo -e "\nInstall R package install.packages('Ckmeans.1d.dp') \n" /;1174 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.js...th next repodata source. Collecting package metadata (repodata.json): don...)? y Downloading and Extracting Packages sibelia-3.0.7 | 24.8...
1161 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1067 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.js...will retry with next repodata source. Collecting package metadata (repodata.json): don...
1067 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1067 days ago
- ...d scour zlib1g-dev Suggested packages: autoconf-archive gnu-sta...2-rsvg-2.0 The following NEW packages will be installed: autoco...Extracting templates from packages: 100% Selecting previously...lecting previously unselected package libtool. Preparing to unpack...
1067 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.js...roceed ([y]/n)? y Downloading and Extracting Packages certifi-2021.5.30 | 139...1067 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1067 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name...1059 days ago
- conda install -c bioconda megahit Collecting package metadata (current_repodata.json...Solving environment: done ## Package Plan ## environment loca...- megahit The following packages will be downloaded: p...2.9 MB The following NEW packages will be INSTALLED: mega...
1059 days ago
