Results for "BED files"
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Basic command-line to run BLAST
The goal of this tutorial is to run you thro...only the first part of the human and cow protein files - there are 24 files total for human. The databas...t ls Note that this makes a lot of extra files, with the same name as the da...2238 days ago
- LiftOver is a necesary step to bring all genetical analysis to the same reference build. LiftOver can ha...tion and dbSNP rs number over different versions Run: liftOver input.bed hg18ToHg19.over.chain.gz output.bed u...
2154 days ago
Installing Bandage on Ubunty !
...6A030B21BA07F4FBW: Some index files failed to download. They ha....(Reading database ... 480949 files and directories currently ins....o GraphCopy.o CombinatorialEmbedding.o OgmlParser.o ClusterGraph...ui_mainwindow.hCombinatorialEmbedding.o image.o moc_enteroneblast...2183 days ago
Install ImageMagick from Unix Source
ImageMagick builds on a variety o...-Echecking for ANSI C header files... yeschecking for sys/types....in/ld option to reload object files... -rchecking for objdump......yeschecking for X11 configure files... checking for GOMP_parallel...c -m 644 ./www/api/MagickWand/files.html /usr/local/share/doc/Ima...2140 days ago
- Download this https://github.com/...checking for suffix of object files... o checking whether we are...config.status: executing depfiles commands make[1]: Entering d...nction ‘void JobControl::ClearFiles()’: ./analysis/RunButterfly....checking for suffix of object files... o checking whether we are...
2127 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take ab...nbsp;about parameter tweaking. The output directory contains will contain many files. The most interesting ones ar...1939 days ago
- AWK is a standard tool on every P..., particularly ones that read files line by line and split on del...is true # BEFORE any of the files are read. The END pattern is...ming the arguments # are files for it to process delete...you're processing lines from files or standard # input. # # W...
1830 days ago
- ...de.dmp merged.dmp names.dmp nodes.dmp readme.txt The readme.txt file gives a brief description of *.dmp files. These files contain taxonomic information and are briefly described below. Each of the files store...
1542 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...equencing. These reads can be either “single ended” as described above or “paired end.&r.../view/42540/install-fastqc-using-conda Quality trimming/cleanup of read files.This function trims adapters,...1199 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is...) Download the tutorial for CDS and GFF annotation files mkdir -p wgd_tutorial &...ess the CDS file syn: Call I-ADHoRe 3.0 to use GFF files for collinearity analysis vi...1150 days ago
