Results for "BED files"
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Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence ma...T http://mrsfast.sourceforge.net/Home http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/ BFAST...3897 days ago
Public Databases for Bioinformatics !
...12TB RAID5 local storage Filesystem: /users/$USER defa...atterns: # gzip a bunch of files parallel gzip -- *.FILESTO...https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF446WOD.bed.gz, https://www.encodeproj...sts/hg38-human/hg38.blacklist.bed.gz. The human genome version hg...1139 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis...3585 days ago
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
1093 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assem...Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input...
3009 days ago
- ...a program for convenient conversion of genome coordinates (or annotation files) between different assembli...pports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is des...
3009 days ago
- ...on gene annotation formats and the collection of data from multiple data files. They rely on BioPerl SeqFe...related adaptors to access binary file formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox pac...
2998 days ago
- SCALCE (/skeɪlz/, a.k.a. boosting Sequence Co...ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ...
2942 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and...ting environment Retrieving and storing sequencing files (your own data or from p...a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome...2931 days ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
2906 days ago
