Results for "BED files"
Bio-Scripts
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa...021] Simulation completed! :) [Sun Jan 10 17:12:58 2021] Generating output files .. Generating the correspo...1226 days ago
Install htop in elementary/Ubuntu OS !
neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get install htop Reading packag...s) Selecting previously unselected package htop. (Reading database ... 176684 files and directories currently ins...1168 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly troub...Mixture modeling of Ks distributions. pre Check and optionally rename CDS files. syn Co-linearity analyse...1219 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.0...-- Generating done -- Build files have been written to: /home/u...r) ✗ ls CMakeCache.txt CMakeFiles cmake_install.cmake Makefil...Building CXX object src/CMakeFiles/i-visualize.dir/AlignmentDraw...Building CXX object src/CMakeFiles/i-adhore.dir/Multiplicon.cpp....1219 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$...nselected package m4. (Reading database ... 202932 files and directories currently ins...doc-base (0.10.8) ... Processing 10 added doc-base files... Processing triggers for m...
1070 days ago
- (JitMetaENV) ➜ test_phase_assebly conda install -c bioconda bwise Collecting...ome/urbe/JitSimuStudy/test_phase_assebly usage: bwise [-h] [-x PAIRED_READFILES] [-u SINGLE_READFILES] [-s KMER_SOLID...
1005 days ago
Commands to transfer files and folder in docker !
#To copy files between host machine and container (execute the commands on host, not inside container): $ docker cp FILE_OR_FOLDER_ON_HOST CONTAINER_ID:/CONTAINER_DIRECTORY #or $ docker cp CONTAINER_ID:FILE_OR_FOLDER_IN_CONTAINER HOST_DIRECTORY1001 days ago
- Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/$ sudo apt install jellyfish Readin...usly unselected package libjellyfish-2.0-2:amd64. (Reading database ... 329798 files and directories currently ins...
997 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/V...one simultaneously. Error correction on multiple files may be done like this: tad...nd input file for paired data. extra= Extra files for use as kmer data, but not...992 days ago
Inreractive SCP / File transfer !
#!/bin/bash #next line prints hearer of script echo "Interactive Script to Copy File (files) / Directory using scp" #nex...966 days ago
