Results for "BLAT"
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...lly curated or experimentally verified) are available on the old assembly. The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data...3001 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for sta...with no arguments. The UCSC Genome Browser and Blat software are free for academi...tware, see http://genome.ucsc.edu/license/. The Blat and In-Silico PCR software ma...2993 days ago
- ...eate Cytoscape files to visualize transcript evidence that suggests adjacency between scaffolds and contigs. Software requirements BLAT (tested with Standalone BLAT v. 32×1). Source Binari...
2805 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd...
2800 days ago
Standardized velvet assembly report
...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, add faToTwoBit,gfClient,gfSe...2698 days ago
- ...her gene annotations. Compare all exons against all exons in other genomes and record significant alignments between exons. Currently, we use BLAT to do this all-vs-all co...
2639 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2239 days ago
