Results for "BLAT"
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...lly curated or experimentally verified) are available on the old assembly. The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data...3017 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for sta...with no arguments. The UCSC Genome Browser and Blat software are free for academi...tware, see http://genome.ucsc.edu/license/. The Blat and In-Silico PCR software ma...3009 days ago
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Genome Assembly Tools and Software - PART2 !!
...valuating the correctness of genome assemblies. Baa.pl 0.20 – use BLAT to ASSESS an ASSEMBLYBaa.pl is a simple script that parses the output of a BLAT run of a transcriptome vs. a...2696 days ago
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Commercial and public next-gen-seq (NGS) software
...cs for: reads, contigs and snps. Align/Assemble to a reference BFAST - Blat-like Fast Accurate Search Too...ng and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and ELAND. From the Wold lab....3529 days ago
Software packages for next gen sequence analysis
...- Fledgling commercial product. Align/Assemble to a reference * BFAST - Blat-like Fast Accurate Search Too...ng and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and ELAND. From the Wold lab....3252 days ago
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Video
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3900 days ago
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- It's been a while since I last installed BLAT and when I went to the download directory at UCSC: http://users.soe.ucsc.edu/~kent/src/ I found that the latest blast is now version 35 and that the code to download was: blatSrc35.zip. However, you can also get pre-compiled binaries at...
Tags: blat, install, linux, alignment
2073 days ago
Comments
Comment on "Alignment of closely related whole genomes/scaffolds"
...fordjournals.org/content/27/3/334 In my works, I have also used BWA-SW, BLAT and LASTZ. However, LASTZ is not well-suited for aligning to many chromosomes at once. Whereas, the BLAT is difficult as PSL to BAM co...3029 days ago
