Results for "BUSCO"
Blogs
Software for genome assembly !
...tps://github.com/PacificBiosciences/ GenomicConsensus 8 PILON error correction https://github.com/broadinstitute/pilon/wiki 9 BUSCO single copy gene markers http://busco.ezlab.org/ 10 Bandage graph...1357 days ago
Bookmarks
- ...alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes...r but by default considers the number of missing, duplicated and single BUSCO genes within the assembly. Ha...
1105 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3023 days ago
- +4 more Bookmarks
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...heterogeneity and a novel length-dependent model of gap formation. BUSCO v1.1b1 – Assessing Genome Assembly and Annotation Completeness with Single-copy Orthologs BUSCO completeness assessment emplo...2699 days ago
Bio-Scripts
Installing Busco version 4.0.6
...install -c bioconda -c conda-forge busco=4.0.6 Collecting package met...added / updated specs: - busco=4.0.6 The following pack...1 131.2 MB bioconda busco-4.0.6 |...oconda/linux-64::blast-2.2.31-1 busco bioconda/noarch:...1466 days ago
- ...AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config #run BUSCO python BUSCO.py -i /media/urbe/MyDDrive/lo...-m genome -f #Plot BUSCO python BUSCO_plot.py -wd GRAALHaploid_BUSCO
2150 days ago
- +2 more Bio-Scripts
Comments
Comment on "Short-read assembly using Spades !"
...of assembly: After running SPAdes, the next step is to evaluate the quality of the assembled genome. This can be done using tools such as QUAST or BUSCO. These tools assess the compl...428 days ago
- ...ing the updated tool for assembly validation, you can also try following methods/pipelines CEGMA (formally discontinued but still useful) BUSCO (we have issues with fis...
2944 days ago
