Results for "BUSCO"
Blogs
Software for genome assembly !
...tps://github.com/PacificBiosciences/ GenomicConsensus 8 PILON error correction https://github.com/broadinstitute/pilon/wiki 9 BUSCO single copy gene markers http://busco.ezlab.org/ 10 Bandage graph...1343 days ago
Bookmarks
- ...alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes...r but by default considers the number of missing, duplicated and single BUSCO genes within the assembly. Ha...
1092 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3009 days ago
- +4 more Bookmarks
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...heterogeneity and a novel length-dependent model of gap formation. BUSCO v1.1b1 – Assessing Genome Assembly and Annotation Completeness with Single-copy Orthologs BUSCO completeness assessment emplo...2685 days ago
Bio-Scripts
Installing Busco version 4.0.6
...install -c bioconda -c conda-forge busco=4.0.6 Collecting package met...added / updated specs: - busco=4.0.6 The following pack...1 131.2 MB bioconda busco-4.0.6 |...oconda/linux-64::blast-2.2.31-1 busco bioconda/noarch:...1452 days ago
- ...AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config #run BUSCO python BUSCO.py -i /media/urbe/MyDDrive/lo...-m genome -f #Plot BUSCO python BUSCO_plot.py -wd GRAALHaploid_BUSCO
2137 days ago
- +2 more Bio-Scripts
Tags
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, BUSCO, Genome, Annotation, Pipeline, NGS, Assembly, Orthologs
3009 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the resulting assembled sequences remains complicated and mostly limited to technical measures like N50. BUSCO provides measures for q...
Tags: Bioinformatics, Validation, Assembly, BUSCO, Orthologs, NGS
2916 days ago
- +1 more Tags
Comments
Comment on "Short-read assembly using Spades !"
...of assembly: After running SPAdes, the next step is to evaluate the quality of the assembled genome. This can be done using tools such as QUAST or BUSCO. These tools assess the compl...415 days ago
- ...ing the updated tool for assembly validation, you can also try following methods/pipelines CEGMA (formally discontinued but still useful) BUSCO (we have issues with fis...
2931 days ago
