CoLoRMap: Correcting Long Reads by Mapping short reads
...inimizes the edit score to a long read and extending corrected regions by local assembly of unmapped mates of mapped short reads. Our results on bacterial, fungal and insect data sets...2078 days ago
2077 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
...d Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...ask of testing basecallers). It should in principle work for non-bacterial genomes as well, but I haven'...2050 days ago
2033 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity...1993 days ago
SIMBA: a Genome Assembly Project Management System
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGe...1978 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building contig...1926 days ago
Genome assembly forensics: finding the elusive mis-assembly
...ibes their implementation in our automated validation pipeline, called amosvalidate. We demonstrate the application of our pipeline in both bacterial and eukaryotic genome assembl...1919 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...ule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-s...1853 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...ule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-s...1759 days ago