BOL: Results for "Batch"

Results for "Batch"

- Jit@jit.aber
Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection tools to study molecular evolution
...s sequences into NEXUS, MEGA, or FASTA formats. MySSP has a fairly simple graphical user interface (GUI) for basic use, but also has a specialized batch script interpreter to allow f...
2540 days ago
- Jit@jit.aber
Install ImageMagick from Unix Source
...or bpgdec... bpgdecchecking for bpgenc... bpgencchecking for blender... blenderchecking for xdg-open... /usr/bin/xdg-openchecking for ufraw-batch... ufraw-batchchecking for soffice... /usr/b...
2156 days ago
+1 more Blogs

- Reshma Khatun@reshmakhatun
Google Genomics
...nd variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process genomic data in batch by running principal componen...
3498 days ago
- Tenzin Paul@tenzin
Google Genomics
...ke queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big genomic data easily. Run batch analyses like principal compo...
3436 days ago
+6 more Bookmarks

- Neelam Jha@neelam
Awesome perl frameworks, libraries and software - PART 4
...first version) or from a list of pcap files, which can be processed in batch calio/form-input-nginx-modul...spice - the fastest way to consume threat intelligence agentzh/sshbatch - SSH::Batch for cluster...
2504 days ago

- John Parker@parker
Next generation sequencing in R or bioconductor environment
...results from both methods by identifying their consensus peak set. Documentation [ Publication ] ChIPpeakAnno The ChIPpeakAnno package provides. batch annotation of the peaks ident...
3634 days ago
- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
...ile Output: per-sample output directory and subdirectory providing per-sample text files containing standard out being emitted from R Alamut Batch Description: high-throughp...
2919 days ago
+2 more Top-level pages

- Shikha Logwani@shikha
Conserved Domain Database (CDD) version 3.11 released
...gions in query sequences; Domain annotation displays in CD-Search, BATCH CD-Search, and other services...all use a uniform display style. A new display option in CD-Search and BATCH CD-Search provides “standard”...
3737 days ago
- Jit@jit.aber
Surrogate Variable Analysis (SVA)
...he sva package contains functions for removing batch effects and other unwanted va...etics,2008 PNAS), (2) directly removing known batch effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing batch effects with known control pr...
3485 days ago
+2 more News

- Rahul Nayak@rahul
Download genomes in batch from NCBI
curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {print $20}' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/)(GCA/)([0-9]{3}/)([0-9]{3}/)([0-9]{3}/)(GCA_.+)|\1\2\3\4\5\6/\6_genomic.fna.gz|' > genomic_file
2273 days ago

- Jit@jit.aber
Comment on "Running Trinity on RNA-seq !"
...e the relationships among your samples and biological replicates make sense. If there are any confounding aspects to the data, such as outliers or batch effects, you'll want to catch...
2133 days ago
- Jit@jit.aber
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ssing has finished, in the order of input reads. [false] -B, --batch-mb INT Reads will be loaded in batches of the size specified in me...ng data. [0] -n, --numreads INT Number of reads to process per batch. Value of '-1' processes all...
2302 days ago