Next generation sequencing in R or bioconductor environment
...in some part of the list. The algorithm was developed for detecting t...in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistical methods. The follo...adjacent binding events via a Bayesian hierarchical t-mixture model....3636 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workben...alignments using the Smith-Waterman algorithm. Features a number of support...mina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commerc...QAN - A Consistency-based Consensus Algorithm for De Novo and Reference-gui...3530 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workb...alignments using the Smith-Waterman algorithm. Features a number of support...mina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commerc...QAN - A Consistency-based Consensus Algorithm for De Novo and Reference-gui...3254 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...reference genome and mapping algorithm an experiment directory will...ovac Description: Improved Bayesian inversion somatic caller; unli...Triodenovo Description: Bayesian framework for calling de novo...re-mRNA splicing; combines 12 algorithms to identify mutations’...2920 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a...Lightweight Resources Assembly Algorithm Lightweight resources assembly algorithm for high-throughput sequencin...ularize genome assemblies. The algorithm and benchmarks are described...es cutting-edge technology and algorithms, while also supporting and i...2697 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a proble...hose actions are to be executed. An algorithm is merely the sequence of ste...uage that helps programmers develop algorithms. Pseudocode is a "text-based...e of pseudocode to elaborate on the algorithmic detail and not just cite an...2670 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner.... grickit/Gambot - Gambot is a modular IRC bot written in Perl. grantm/Algorithm-CouponCode - Perl librar...2500 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalig...hird-generation NGS data (can distinguish patients’ specific mutations; algorithm uses k-mers and is based...2382 days ago
2362 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late...SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq duri...nce of Cellular Expression Relationships (SLICER) algorithm for inferring cell trajectori...2362 days ago