Results for "Benchmark"
Users
About me: ArrayGen specializes in Genomics data analysis and research, as we believe in the level of precision, predictability, benchmark-ability, and data analysis capability of genomics data o...2717 days ago
- About me: PhD student at University of Gothenburg. Most of my work involves designing or benchmarking pipelines for transcriptome and genomic sequencing data related to epigenetics and cancer.Interests: benchmarking and designing tools
1305 days ago
Blogs
Computer simulation of genetic mechanism !!
...tistical inference based on approximate Bayesian computation. https://sites.google.com/site/baysicsabc/ BEERS BEERS was designed to benchmark RNA-Seq alignment algorithms...2984 days ago
String graph based genome assembly software and tools !
...d favourably with those of existing leading assemblers. 3. FSG: Fast String Graph The new integrated assembler has been assessed on a standard benchmark, showing that fast string gra...2337 days ago
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Bookmarks
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/soft...3905 days ago
Bioinformatics tools and software
...acterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS >Whole-genom...nment. PREFAB >Protein Reference Alignment Database. MSA benchmark collection >Selected multi...2870 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 2
...-perl DNS resolver with support for timeout japhb/perl6-bench - Benchmark and compare Perl 6 implementa...f Perl Amazon EC2 modules that supports the tag API kappa/perl-httpd-benchmarks - Searching for fastest...2503 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...tten by Laurent Excoffier, John Novembre, and Stefan Schneider. http://www.stanford.edu/group/hadlylab/ssc/index.htmlBEERS BEERS was designed to benchmark RNA-Seq alignment algorithms...3746 days ago
Genome Assembly Tools and Software - PART1 !!
...NanoMark – DNA Assembly Benchmark for Nanopore long reads DNA Assembly Benchmark for Nanopore long readsA syst...enome assemblies. The algorithm and benchmarks are described in the Ge...leteness assessment employs sets of Benchmarking Universal Single-Copy Orth...2694 days ago
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Wire posts
News
BINC Exam merged with DBT- BET JRF Exam
...ng Programme (BITP). While this comes as a surprise for a lot of participants. We believe this is a good attempt to unify and create a national benchmark for talent. And we appreciate...1909 days ago
ResearchLabs posts
ArrayGen Bioinformatics Genomics Group
...ing research processes. ArrayGen specializes in Genomics data analysis and research, as we believe in the level of precision, predictability, benchmark-ability, and data analysis ca...3515 days ago
Tags
- The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU time. This module provides us with a way to optimize our code. With the advent of petascale computing and other multicore processor it is becoming a neccesity to know about the CPU t...
Tags: Benchmark, Perl, Module, Script, Time
2089 days ago
Comments
Comment on "Benchmarking Perl Module !"
...is can be done using the Perl Benchmark module, which provides a simp...de. Here is a quick guide to benchmarking a Perl module using the Be...enchmark code: Write a simple benchmark program that exercises the fu...to run and a reference to the benchmark subroutine. Here's an example...424 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...calls and regions for use in benchmarking and validating variant calling pipelines. Currently, benchmark VCF and BED files for small v...2 on GRCh37 and GRCh38 Benchmarking best practices:To establis...sp;is focused on establishing benchmark large indel and structural va...1569 days ago
