Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executabl...age libgetopt-argvfile-perl. (Reading database ... 193749 files and dire...esign, analysis, and interpretation of data for studies in public health...ting structural variants in sequencing data using genome-wide local assem...1524 days ago
Commands to install conda in Ubuntu !
...T OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS I...stalling: icu-58.2-h9c2bf20_1 ... installing: jbig-2.1-hdba287a_0 ... installing...lib-1.0.1-py37_0 ... installing: importlib_metadata-0.8-py37_0 ... installing: j...1524 days ago
1455 days ago
1415 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/ 02/01/2020, 05:30:00...7 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2accession.gz ftp://ftp....1415 days ago
1228 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz %..._UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150mers.kmer_distrib mini...1227 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use Ex...tem and download the mandatory database # BEGIN { my @impo...File', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...int "\nDownloading third party database for Alienomics\n"; #In...w.arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SI...1173 days ago
1171 days ago
Perl script to check modules installed !
#use strict; use warnings; use ExtUtils::Installed; # # First, check if all t...ir', 'File::Copy', 'POSIX', 'Tie::File', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...1168 days ago