2032 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier,...1999 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we...esent a series of highly efficient tools to calculate functional properties in networks based on the guilt-by-associa...1982 days ago
1950 days ago
Osprey: Network Visualization System
...or the visualization of complex biological interaction networks. Osprey builds data-rich...ion data maintained by the BioGRID. Osprey is developed by... and is a part of the BioGRID family of software....k Visualization System." Genome Biology 2003 4(3):R22 [Genome Bio...1945 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1758 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraplo...1733 days ago
TwinBLAST: When Two Is Better than One
TwinBLAST is a web-based tool for viewing 2 BLAST reports simultaneouslyside-by-side. It uses ExtJS (www.sencha.com/products/extjs/) to provide 2independently scrollable panels. BioPerl (www.bioperl....1715 days ago
1656 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXM...1623 days ago