SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
The Docker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information on benchm...at the project documentation site http://biodatageeks.org/sequila/benchmar...iLa-cov • Project home page: http://biodatag...1616 days ago
Machine learning training and courses in bioinformatics !
...ave been successful in analyzing biological data because of their...dden Markov models, and Bayesian networks) for biological sequence analysis and...ues, such as Naive bayes, neural networks and SVMs will only be covered...net.missouri.edu/cheng_courses/mlbioinfo/mlbioinfo.htm http://www.raet...1599 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the ar...1559 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
...ive visualization of enrichment analysis results and related networks. Currently, netGO suppo...m netGO-Data repository. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa077/57286351557 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of indi...1461 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve gra...ualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V....ighlighted, hierarchical clustering trees and networks summarizing overlapping terms...1445 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibo...ulate function. The framework is based on rigorous bioinformatic analysis and rooted...cumentation/antibody/RosettaAntibodyDesign https://bio-jade...1336 days ago
Introduction to Bioinformatics and Computational Biology
This is the course material for STAT115/215 BIO/BST282 at Harvard University. Xiaole Shirley Liu (lead instructor)Joshua S...eagues in the community, who helped Dr. Liu in prepare the STAT115/215 BIO/BST2...1209 days ago
Interactive Bioinformatics Resources !
Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want. More at sandbox.bio1010 days ago
A guide to machine learning for biologists
...ost recently developed and widely used techniques involving deep neural networks. We describe how different techniques may be suited to specific types of biological data, and also discuss some...976 days ago