Results for "Bioinformatics Research"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong S...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...1060 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment...890 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &b...pression of FASTQ files, Bioinformatics, 2014; 30(15):2213&ndash...for raw sequencing data, Bioinformatics, 2018; 34(16):2748&ndash...ating k -mer statistics, Bioinformatics, 2017; 33(17):2759&ndash...877 days ago
List of comparative genomics resources !
...al Models to Human DIsease, is designed to accelerate the research process by providing biomedical researchers with a simple, comprehensi...of genomic sequences. cBARBEL -- Catfish Breeder and Researcher Bioinformatics Entry Location Find in...691 days ago
- barrnap - https://github.com/tseemann/barrnap CPAT - https://github.com/liguowang/cpat, http://lilab.research.bcm.edu/ (web server) C...
558 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v...inute video will change your mind on reproducible research 2. Parallel sequencing...from MD Anderson [The Importance of Reproducible Research in High-Throughput Biology](h...554 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequ...These are just a few examples of the many bioinformatics tools available for exploring SSRs. Depending on your specific needs and research questions, you may find that...438 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical location where a chromosom...diagnosis, prognosis, and treatment of genetic diseases and cancer. Further research is needed to understand the m...438 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous mann...as genetic markers and are important in many areas of genetics and genomics research. Here are some methods for di...437 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an es...per that is appropriate for your type of data and research question. Index the refe...es careful consideration of the type of data, the research question, and the specific ma...437 days ago
