Results for "Bioinformatics and Computational Biology"
Blogs
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is u...evelopment of source codes, standalone software/tools, and algorithms in bioinformatics programmes. Differ... syntax: exec "command"; It's a Perl function (perl...650 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distributio...ithub.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/...u need to register at http:// bioinformatics.psb.ugent.be /webt...Download the tutorial for CDS and GFF annot...1168 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong S...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinfo...1060 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapte...calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools)...level QC (picard, SAMtools) Genome-wide and amplicon...lin) Clade assignment, mutation calling and seq...890 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &b...n containing hundreds of thousands of sequences). • Deoro...icz, S., KMC 3: counting and manipulating k -mer statistics, Bioinformatics, 2017; 33(17)...of DNA sequencing data, Bioinformatic...876 days ago
List of comparative genomics resources !
...atabase to Compare Structural and Functional Annotations of Proteins betwe...e map viewer dedicated to the biology of the Solanaceae family....oup of species. VISTA -- Computational Tools for Comparative Genomic...atfish Breeder and Researcher Bioinformatics Entry Location Find i...690 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick B...f the Neutral Theory in 1968 and 50 years on: a response to Kern a...ur I. Journal of Theoretical Biology. 7:1-52. 2. Trivers, R. L....4. *Joshka Kaufmann and Leslie Turner* They offer us a...690 days ago
- SLURM commands The following table shows SLURM commands on the SOE cluster. CommandDescription sbatch Sub...m.out # file to collect standard output #SBATCH --error=sl...create a temporary space on a computational node - see the discussio...mat=list The command bel...
682 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick B...f the Neutral Theory in 1968 and 50 years on: a response to Kern a...ur I. Journal of Theoretical Biology. 7:1-52. 2. Trivers, R. L....4. *Joshka Kaufmann and Leslie Turner* They offer us a...590 days ago
Interesting Bioinformatics Resources !
...w with R Markdown, Git, Make, and Docker https://psyarxiv.com/8xzqy/ 5. Practical Computational Reproducibility in...Dr.Keith A. Baggerly from MD Anderson [The Importance of Reproducible Research in High-Throughput Biology](https://www.youtube.com/watch?v=7g...554 days ago
