Results for "Breakpoint"
Users
About me: ...oinformatics and computational biology, I mainly focus on chromosomal breakpoint and amniotes evolution. I (We...l/en/theses/computational-identification-and-analysis-of-evolutionary-breakpoint-regions-in-amniote-genomes(57...Interests: Chromosomal Breakpoints11 days ago
Blogs
Dynamic chromosome breakpoints !!!
...of the resulting recombined molecules happens. The “chromosomal breakpoints” refers to these place...nfo%3Adoi%2F10.1371%2Fjournal.pcbi.0020014). In addition the study of breakpoint regions and non-breakpoint (s...3554 days ago
- ...encing based tests in multi-gene testing. We will also show how NGS based tests help to identify copy number variations, split read analysis and breakpoint identification. Finally, we w...
2804 days ago
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Bookmarks
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...eR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivi...lele-specific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer gen...1097 days ago
Comparative genomics educational material and papers bookmarks
...ary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located....2735 days ago
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Top-level pages
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference-free SNP de...2242 days ago
Wire posts
Bio-Scripts
- ...sniffles [ 57%] Building CXX object src/CMakeFiles/sniffles.dir/tree/Breakpoint_Tree.cpp.o [ 58%] Building C...otyper/Genotyper.cpp: In member function ‘void Genotyper::update_file(Breakpoint_Tree&, breakpoint_node*&)’:...
2100 days ago
Tags
- Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct
Tags: Bioinformatics, Computational Biology, destruct, Rearrangement, Breakpoint
2989 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the in...Tags: MGRA, Breakpoint, graphs, ancestral, genome, reconstructions
2477 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...e Comparison Tool" (poster), WABI 2012 http://bioinf.spbau.ru/sites/default/files/SyntenyFinder.pdf 2. Max A. Alekseyev and Pavel A. Pevzner. "Breakpoint graphs and ancestral genome...1286 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...mple to handle, needs to be set) and (iii) it provides a rich set of graphic outputs (notably an interactive synteny map that allows zooming in breakpoint regions).1595 days ago
