2157 days ago
2696 days ago
A guide for complete R beginners :- Getting data into R
...quo;?function’ Histogram of A hist(mydata$A) If there was more data we could increase the number of vertical columns with the option, breaks=50 (or another relevant numbe...3360 days ago
Tools for Searching Repeats And Palindromic Sequences
...rmation during gene amplification. Other studies have attempted to relate palindrome formation to molecular mechanisms involved in double stranded breaks and in the formation of inver...2214 days ago
Breaking chromosomes to study cancer !!!
...This page describes what happens when someone has a reciprocal translocation. Reciprocal chromosomal translocations occur following double-strand breaks (DSBs) in DNA when a section...3582 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR...2302 days ago
Perl script to break the contigs by 'N'
...ce my $seq = $seqobj->seq; my $lenseq=length $seq; $seq = uc $seq; #now all bases are in uppercase #Searches for NNNNN regions (scaffold breaks) #Hash nregions stores a ha...2065 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
PaReBrick. The tool takes a collection of strains represented as a sequence of oriented synteny blocks and a phylogenetic tree as input data. It identifies rearrangements, tests them for consistency with a tree, and sorts the events by their parallelism score. The tool provides diagrams of the ne...Tags: PaReBrick, Parallel, Rearrangements, Breaks, identification, toolkit
943 days ago
Tags: AnchorWave, Anchored, Wavefront, Alignment, collinear, regions, conserved, anchors, CDS, exon, currently, breaks, collinear, regions, fragments, anchor, inter-anchor, intervals
805 days ago