3907 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...and computational genomics. Information on file formats used by the University of California - Santa Cruz Genome Browser is on the FAQ list A manual for the Integrated Genome Browser visualization tool is here C...3771 days ago
List of bioinformatics open source projects/software.
...ENtle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Integrated Genome Browser http://bioviz.org/igb/ Java-based desktop genome browser Integrative Genomics Viewer...3749 days ago
Commercial and public next-gen-seq (NGS) software
...Includes SNP detection, CHiP-seq, browser and other features. Commercia...Includes SNP detection, CHiP-seq, browser and other features. Commercia...ut (with Affy's Integrated Genome Browser), and produces results very s...tegory. Genome Annotation/Genome Browser/Alignment Viewer/Assembly Dat...3511 days ago
Apps for Busy Bioinformatics Researchers !!!
.../us/app/biogene/id333180084?mt=8 Mentha - the interactome browser: Android About: mentha - the interactome browser, is a project that offers pro...eq and UniProt. SimGene also contains an integrated genome browser with information on genes, tr...3533 days ago
Software packages for next gen sequence analysis
...h software. Includes SNP detection, CHiP-seq, browser and other features. Commercia...e assembly. Includes SNP detection, CHiP-seq, browser and other features. Commercia...at Boston College. Genome Annotation/Genome Browser/Alignment Viewer/Assembly Dat...3235 days ago
Comprehensive list of visualization tools for biological pathways
...d interactions between them http://genome.tugraz.at/pathwayexplorer/pathwayexplorer_description.shtml Pathway projector Zoomable pathway browser using KEGG atlas and Google M...2279 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological I...variant detection, RNA-Seq, ChIP-Seq, Genome Browser, etc (entire list on website)...ite: can upload sequence of BED files Genome browser: BED and BAM files, Public da...2901 days ago
Awesome perl frameworks, libraries and software - PART 1
...bsp;- A simple perl script to convert epub documents to documents that browsers can natively browse. jmcnam...- Braintree Perl library yuki-kimoto/gitweblite - Git repository browser. This is gtiweb.cgi clone to...2481 days ago
Tools for bacterial whole genome annotation
...uts are minimal and its ouputs can be directly loaded into a Generic Model Organism Database (GMOD). They can also be viewed in the Apollo genome browser; this feature of MAKER provid...2324 days ago