Bandage: interactive visualization of de novo genome assemblies
...lability and implementation: Source code and binaries are freely available at https://github.com/rrwick/Bandage. Bandage is implemented in C++ and supported on Linux, OS X...2355 days ago
MOSS: A System for Detecting Software Similarity
...ver other cheating detection algorithms (at least, over those known to us). Moss can currently analyze code written in the following languages: C, C++, Java, C#, Python, Visual Ba...2350 days ago
Mash: fast genome and metagenome distance estimation using MinHash
...see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is availab...2347 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...equence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as be...2247 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genom...2166 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...llumina 1.8 or newer formats The author has reimplemented this tool in C++ with multithreading support...and can be found at: https://github.com/OpenGene/fastp . If you prefer a C++ based tool, please use fastp...2148 days ago
Seq: A high-performance, Pythonic language for bioinformatics
...writing high-performance genomics software as easy as writing Python code, and achieves performance comparable to (and in many cases better than) C/C++. Learn more by following th...1636 days ago
1573 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables p...1565 days ago
pbmm2:A minimap2 frontend for PacBio native data formats
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-th...1549 days ago