Calculate ATGC percentage in parallel with perl
...ences{$name}; my $length=length $DNA; my $a=($DNA=~tr/A//); my $b=($DNA=~tr/C//); my $c=($DNA=~tr/G//); my $d=($DNA=~tr/T//); my $Total=$a+$b+$c+$d; my $GC=($DNA=~s/GC/GC/g);...2667 days ago
2162 days ago
Installing Porechop on Ubuntu !
...align.o porechop/src/alignment.o Compiling Porechop: make -j 8 g++ -std=c++14 -Iporechop/include -fPIC -...-o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++14 -Iporechop/include -fPIC -...2117 days ago
2109 days ago
1615 days ago
Samtools commands for bioinformatician !
...iner to count mean depth samtools depth -a sorted_dupremoved.bam | awk '{c++;s+=$3}END{print s/c}' ###...o count coverage breadth samtools depth -a sorted_dupremoved.bam | awk '{c++; if($3>0) total+=1}END{print...1614 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...b/R/bin/R checking for endianness... little checking for R >= 3.1.0 for C++11 use... yes checking for R...... yes checking for elf.h... yes checking whether we are using the GNU C++ compiler... yes checking wh...1561 days ago
Install Parrot Virtual Machine !
.........yes. auto::backtrace - Does libc have the backtrace* functions.............yes. auto::msvc - Is your C compiler actually Visual C++..........skipped. auto::att...1548 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...one -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX...dio.h:862:0, from /usr/include/c++/7/cstdio:42,...dio.h:862:0, from /usr/include/c++/7/cstdio:42,...1214 days ago
1065 days ago