Comment on "Mugsy: multiple whole genome alignment tool"
...Set up the environment bash source /path/to/install/mugsyenv.sh... mugsy --directory /data/output --prefix myg...data/output/mygenomes.maf. The --directory setting is also used for...lines in the FASTA files should not contain ':' or '-' to avoid par...1296 days ago
Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021305 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...nd gnuplot/4.6.5) – we can plot the kmer content of the assembly compare...e first thing we need to do is to combine the reads into a single...q We will now use kat comp to create a kmer cont...download the output files to you computer using scp an...1347 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is...o form smaller (but hopefully correct) contigs. Reapr runs pr...verything’s ok! in this case, no output is good output,...he raw data for this. Run the command reapr perfectmap&n...1347 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1352 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
NAR Web server accept tools https://academic.oup.com/nar/issue/43/W11352 days ago
Comment on "List of GOI approved peer reviewed bioinformatics and computational biology journals"
GENOMICS AND COMPUTATIONAL BIOLOGY https://genomicscomputbiol.org/ojs3/GCB/index1354 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Methods in Molecular Biology https://www.springer.com/series/7651 Accept bioinformatics tools, such as ART etc1367 days ago
1371 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
International Journal of Bioinformatics Research and Applications Indexed in Scopus (Elsevier) Academic OneFile (Gale) ACM Digital Library Current Awareness in Biological Sciences (Elsevier) Chemical Abstracts (CAS)1373 days ago