Results for "Calculated"
Blogs
BBTools for bioinformatician !
...about BBMap alignments BBMap is always nondeterministic when run in paired-end mode with multiple threads, because the insert-size average is calculated on a per-thread basis, which...2325 days ago
CANU genome assembly parameters !
...at could be assembled and is part of the primary assembly The basic stats of assembly can be read from reports generated by the assembler, or calculated using standard UNIX command l...1999 days ago
- +2 more Blogs
Bookmarks
CovCal: Coverage / Read Count Calculator
...ulate. Written by Stephen Turner, based on the Lander-Waterman formula, inspired by a similar calculator written by James Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L...2220 days ago
eQuant : energy-based quality assessment of protein
...es.eQuant is a service for structure quality assessment of single proteins, which utilizes a coarse-grained energy model. The overall quality is calculated as well as the reliability of...2561 days ago
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Top-level pages
List of In-silico Binding Site Prediction Tools
...ds' surface) and by molecular surface model (Connolly's surface), all calculated analytically. CASTp can be us...ts of these proteins with the query. Structural similarity scores are calculated for the query protein's surfa...3798 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau–Levenshtein dist...2395 days ago
News
- ...mitochondrial DNA with Neandertals, Denisovans, present-day humans, and apes.From the missing mutations in the old DNA sequences the researchers calculated that the Sima hominin lived a...
3836 days ago
Tags
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of the variant may have on each transcript. The set of consequence terms, defined by the Sequence Ontology ...Tags: Ensembl, Variation, Calculated, variant, consequences, Variant, Effect, Predictor
2119 days ago
Comments
Comment on "A quick guide to Phred scaling"
...Quality score calculation: The Phred score for each base call is calculated as follows: Q = -10 * log10(...es indicate greater confidence in the base call. The Phred scores are calculated based on the probability of a...469 days ago
