ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the rec...1878 days ago
1859 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactor...1266 days ago
Applied Computational Genomics Course at UU: Spring 2020
...odern DNA sequencing technologies will be explored including sequence alignment, the identification of genetic variation, structural variation, and ChIP-seq and RNA-seq analysis. Stu...1239 days ago
1208 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transc..., miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database curren...contains ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species....868 days ago