SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were teste...2354 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outp...2350 days ago
2337 days ago
Bandage: interactive visualization of de novo genome assemblies
...analyzing de novo assemblies that are not possible through investigation of contigs alone. Availability and implementation: Source code and binaries are freely avail...2343 days ago
2320 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
...ble in "allele-specific" mode) snakePipes can be installed via conda : 'conda install -c mpi-ie -c bioconda -c conda-forge snakePipes'. Source code (https://github.com/maxplanck...1801 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...graph approach is already included into the current SPAdes distribution, we're also releasing the Rectangle Graph Module (RGM) as the separate code which can be run independentl...2319 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome u...2319 days ago
Frontend: Perl Web framework documentation - Andrej Sali Lab
The frontend is a set of Perl classes that displays the web interface, allowing a user to upload their input files, start a job, display a list of all jobs in the syst...2307 days ago
mojolicious: a next generation web framework for the Perl programming language.
...g framework, static file server, CGI/PSGI detection, first class Unicode support and much more for you...sed too, but may require additional CPAN modules to be installed) Fresh code based upon years of experienc...2304 days ago