NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links t...2107 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use...2038 days ago
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FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, t...2098 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...l competing algorithms and highest accuracy when most of the basepairs of a long read are covered with short reads. Availability: Hercules source code is available at https://githu...2097 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...rt reads. Our results on bacterial, fungal and insect data sets show that CoLoRMap compares well with existing hybrid correction methods.The source code of CoLoRMap is freely availab...2097 days ago
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