Commercial and public next-gen-seq (NGS) software
...or Linux. Counting e.g. CHiP-Seq, Bis-Seq, CNV-Seq BS-Seq - The source code and data for the "Shotgun Bis...m by Matthew Bainbridge, in collaboration with Gordon Robertson. Current code and implementation by Anthony...3521 days ago
3552 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing files - ab1. It includes handy tools such as "Reverse C...3544 days ago
Software packages for next gen sequence analysis
...r Linux. Counting e.g. CHiP-Seq, Bis-Seq, CNV-Seq * BS-Seq - The source code and data for the "Shotgun Bis...m by Matthew Bainbridge, in collaboration with Gordon Robertson. Current code and implementation by Anthony...3245 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s graphs produced by de novo assembler Cortex; c++ source code for SNP detection “2kplus2.cpp is a c++ source code for the detection and the cla...snpEff), loss-of-function mutation annotation, selected ENCODE annotation, allele frequency...2911 days ago
2917 days ago
Genome Assembly Tools and Software - PART1 !!
...evaluation in the tex directory). The assembly does not only encode SNPs and short INDELs, but al...embling genome sequences from whole genome shotgun(WGS) reads. CodonCode Aligner 6.0.2 – DNA Seq...2688 days ago
Source Code and Pseudo Code !!
...y the "switch" statement. Pseudocode is an artificial and informal...grammers develop algorithms. Pseudocode is a "text-based" detail (alg...VER ANY DATA DECLARATIONS IN PSEUDOCODE Print out appropriate head...ion tend to foster desirable pseudocode. Also, using words such as Se...2662 days ago
Perl Special Vars Quick Reference
...for named submatches. $^R Last regexp (?{code}) result. ${^RE_DEBUG_FL...${^ENCODING} The object reference to the Encode object, used to convert the s...Status Reporting $? Child error. Status code of most recent system call or...2647 days ago
Awesome perl frameworks, libraries and software - PART 1
...-live - Core BioPerl 1.x code tadzik/rakudobrew - Per...bsp;- Yet Another Perl Source Code Linter briandfoy/PerlPowerTo...Devel::KYTProf - Simple Perl code profiler finance-quote/finan.../markdownshare.com - The code behind http://markdownsh...2492 days ago