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Learning Python Programming - a bioinformatician perspective !
...the program does not need to be compiled. Interpreter parses the program code and generates the output. Py...strongly typed. So the developers need to cast the type manually. Less code and more use makes it more ac...2186 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna ...2142 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads...2113 days ago
Parallel Processing with Perl !
...ork){ push (@childs,$fork); }elseif($fork==0){your code here;exit(0);}else{die &ldquo...at a fork does is it creates a child process and takes the variables and code with it to analyze it separat...2083 days ago
- ...a great tool to know the time the code takes to run. The output is u...ides us with a way to optimize our code. With the advent of petascale...rst_time = Benchmark->new; our code…… $second_time...the time taken by some part of the code in the program. More sophi...
2083 days ago
- ...ast is now version 35 and that the code to download was: blatSrc...o I decided to download the source code and compile that.I will be co...ME file that comes with the source code.One thing about building blat...ase for all architectures.The BLAT code assumes that you are compilin...
2066 days ago
- ...usually guesses this correctly) Elgg Install Directory /home/your-user-id/public_html/elgg/elgg.1.8.0.1/ The directory where you put the Elgg code (Elgg usually guesses this co...
895 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the...828 days ago
- Elgg is an open source social networking engine that allows the creation of social environments such as campus social networks and internal collaborative platforms for...
609 days ago
Steps to find all the repeats in the genome !
...le to extract the information you need. There is a Perl tool called "one_code_to_find_them_all.pl" that can...urce provided. Use the provided Perl script: Once you have the "one_code_to_find_them_all.pl" script,...251 days ago
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