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Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes,...650 days ago
Levenshtein and Damerau-Levenshtein distance !
Levenshtein Distance Also known as Edit Distance, it is the number of transformations (deletions, insertions, or...2.Edit Distance is very easy to implement, and it is a popular challenge during code i...963 days ago
- REST API The Representational State Transfer (REST) sample clients are provided for a number of programming languages. For details of how to use these client...
957 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldqu...947 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing...differ from its ancestor by at least one nucleotide.At least 95% of its genetic code s...904 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignmen...890 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Com...nformation mining and beyond Search for publicly available QTL da...ase Of Transcribed Sequences Search for Indices of gene and trans...quence and epitope database. Search for influenza sequence, vacci...otations of regulatory sites Search for genome-wide annotations o...690 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General inf...gdom, kingdom, ...) embl code -- locus-name prefix; not uni...s division from parent genetic code id -- see gencode.dmp file &...n id division cde -- GenBank division code (...673 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that re...ds for discovering palindromes in genomes: Direct sequence search: One of the simplest ways to discover palindromes is to search the genome sequence directly...436 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical LearningThis book provides a broad and less technical treatment of key topics in...ataScienceHandbook/ Dive into Deep LearningInteractive deep learning book with code,...429 days ago
